read the original ECUs EEPROM file then write that original EEPROM file to the donor ECU (benchmode required for flashing to EEPROM). Alternatively, you could read the donor EEPROM, edit it (or turn immobilizer off) using one of the available EEPROM tools;
https://nefariousmotorsports.com/forum/index.php?topic=6134.0or
https://nefariousmotorsports.com/forum/index.php?topic=18686.0or else just edit the donor EEPROM file directly using a hex editor to change the SKC and any other data you might want changed (soft coding, VIN, immobilizer ID), checksum correct and then flash back to the donor EEPROM (in benchmode).