Success! Flashed and car started up fine. Ran VCDS, changed coding to manual, cleared codes, and no faults, ABS, ASR all good and no more complaining about TCM missing.
![Smiley](http://nefariousmotorsports.com/forum/Smileys/default/smiley.gif)
Throttle body won't align but that is a different issue. I did have one immobolizer error, but it could have been my fault, I had left the key in the ignition for a long time while I was reading. I pulled the key and tried again and it was fine.
Thanks so much! Going to do some more reading and see if I can successfully code out EVAP, SAI, CCV, etc..
Brendan